Citations

If you use MagicMap for genetic map construction, please cite

Zheng et al. 2024(2). "Efficient consensus map construction in connected multiparental populations”. In preparation.

If you use MagicImpute for genotype imputation, please cite

Zheng et al. 2024. “Genotype imputation in connected multiparental populations”. In preparation.

If you use MagicReconstruct for haplotype reconstruction, please cite

Zheng, Chaozhi, Martin P Boer, and Fred A Van Eeuwijk. 2015. “Reconstruction of Genome Ancestry Blocks in Multiparental Populations.” Genetics 200 (4): 1073–87. https://doi.org/10.1534/genetics.115.177873.

See section Statistical framework for more references.

Acknowledgements

Thanks to the STW-RijkZwaan project (No. 12425) and BASF for financial supports. Thanks to Eligio Bossolini and Natasa Formanova for testing and providing valuable feedbacks! Thanks to Bart-Jan van Rossum for editing this manual!