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Process all assay tab data

Source: R/processAssay.R
processAllAssays-methods.Rd

Process data from all assay tab files present in an object of ISAjson.

Usage

processAllAssays(isaObject, study, type = c("raw", "derived"))

# S4 method for class 'ISAjson,character,character'
processAllAssays(isaObject, study, type = c("raw", "derived"))

Arguments

isaObject

An object of the ISAjson.

study

A character string indicating for which study the data files should be processed.

type

A character string indicating which data files should be processed, either "raw" for raw data files, or "derived" for derived data files. The file names are taken from the corresponding column in the aTabObjects.