Summarize Linear Mixed Model fits

Summary method for class "LMMsolve". Creates either a table of effective dimensions (which = "dimensions") or a table of variances (which = "variances").

Usage

# S3 method for LMMsolve
summary(object, which = c("dimensions", "variances"), ...)

# S3 method for summary.LMMsolve
print(x, ...)

Arguments

object

An object of class LMMsolve

which

A character string indicating which summary table should be created.

...

Some methods for this generic require additional arguments. None are used in this method.

x

An object of class summary.LMMsolve, the result of a call to summary.LMM

Value

A data.frame with either effective dimensions or variances depending on which.

Methods (by generic)

• print(summary.LMMsolve): print summary

Examples

## Fit model on john.alpha data from agridat package.
data(john.alpha, package = "agridat")

## Fit simple model with only fixed effects.
LMM1 <- LMMsolve(fixed = yield ~ rep + gen,
                data = john.alpha)

## Obtain table of effective dimensions.
summ1 <- summary(LMM1)
print(summ1)
#> Table with effective dimensions and penalties: 
#> 
#>         Term Effective Model Nominal Ratio Penalty
#>  (Intercept)         1     1       1     1    0.00
#>          rep         2     2       2     1    0.00
#>          gen        23    23      23     1    0.00
#>     residual        46    72      46     1    7.43
#> 
#>  Total Effective Dimension: 72 

## Obtain table of variances.
summ2 <- summary(LMM1,
                which = "variances")
print(summ2)
#> Table with variances: 
#> 
#>   VarComp Variance
#>  residual     0.13
#>