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Solve mixed models

LMMsolver LMMsolver-package
Package LMMsolver
LMMsolve()
Solve Linear Mixed Models
LMMsolveObject
Fitted LMMsolve Object
summary(<LMMsolve>) print(<summary.LMMsolve>)
Summarize Linear Mixed Model fits
coef(<LMMsolve>)
Coefficients from the mixed model equations of an LMMsolve object.
fitted(<LMMsolve>)
Fitted values of an LMMsolve object.
residuals(<LMMsolve>)
Residuals of an LMMsolve object.
logLik(<LMMsolve>)
Log-likelihood of an LMMsolve object
mLogLik()
Function to obtain restricted log-likelihood and the first derivatives of the log-likelihood, given values for the penalty parameters
deviance(<LMMsolve>)
Deviance of an LMMsolve object
predict(<LMMsolve>)
Predict function
multinomial()
Family Object for Multinomial Model
diagnosticsMME()
Give diagnostics for mixed model coefficient matrix C and the cholesky decomposition
displayMME()
Display the sparseness of the mixed model coefficient matrix
effDim()
Function to get the Effective Dimensions.

Spline functions

spl1D() spl2D() spl3D()
Fit P-splines
obtainSmoothTrend()
Obtain Smooth Trend.

data

APSIMdat
Simulated Biomass as function of time using APSIM wheat.
barley.uniformity.trial
Uniformity trial of barley
multipop
Simulated QTL mapping data set
oats.data
Alpha lattice design of spring oats
SeaSurfaceTemp
Sea Surface Temperature