Package index • LMMsolver

Solve mixed models

LMMsolver LMMsolver-package: Package LMMsolver

LMMsolve(): Solve Linear Mixed Models

LMMsolveObject: Fitted LMMsolve Object

summary(<LMMsolve>) print(<summary.LMMsolve>): Summarize Linear Mixed Model fits

coef(<LMMsolve>): Coefficients from the mixed model equations of an LMMsolve object.

fitted(<LMMsolve>): Fitted values of an LMMsolve object.

residuals(<LMMsolve>): Residuals of an LMMsolve object.

logLik(<LMMsolve>): Log-likelihood of an LMMsolve object

mLogLik(): Function to obtain restricted log-likelihood and the first derivatives of the log-likelihood, given values for the penalty parameters

deviance(<LMMsolve>): Deviance of an LMMsolve object

predict(<LMMsolve>): Predict function

multinomial(): Family Object for Multinomial Model

diagnosticsMME(): Give diagnostics for mixed model coefficient matrix C and the cholesky decomposition

displayMME(): Display the sparseness of the mixed model coefficient matrix

Spline functions

spl1D() spl2D() spl3D(): Fit P-splines

obtainSmoothTrend(): Obtain Smooth Trend.

data

APSIMdat: Simulated Biomass as function of time using APSIM wheat.

multipop: Simulated QTL mapping data set

SeaSurfaceTemp: Sea Surface Temperature