Skip to contents

Data preparation

createGData()
S3 Class gData
codeMarkers()
Code and impute markers
summary(<gData>)
Summary function for the class gData
plot(<gData>)
Plot function for the class gData
kinship()
Functions for calculating kinship matrices
readPLINK()
Read PLINK binary data

Single trait GWAS

runSingleTraitGwas()
Perform single-trait GWAS
summary(<GWAS>)
Summary function for the class GWAS
plot(<GWAS>)
Plot function for the class GWAS

Example data