Package index • statgenGWAS

Data preparation

createGData(): S3 Class gData

codeMarkers(): Code and impute markers

summary(<gData>): Summary function for the class gData

plot(<gData>): Plot function for the class gData

kinship(): Functions for calculating kinship matrices

readPLINK(): Read PLINK binary data

readVcf(): Read variant call format data

Single trait GWAS

runSingleTraitGwas(): Perform single-trait GWAS

summary(<GWAS>): Summary function for the class GWAS

plot(<GWAS>): Plot function for the class GWAS

Example data

dropsData dropsMap dropsMarkers dropsPheno: DROPS data sets