Function for removing selected time points from an object of class TP.
Arguments
- TP
An object of class TP.
- timePoints
A character or numeric vector indicating the time points to be removed. When using a character string to reference a time point, the value has to be an exact match to one of the existing timePoints. When using a number it will be matched by its number ("timeNumber") in the timePoints attribute of the TP object.
See also
Other functions for data preparation:
as.data.frame.TP(),
createTimePoints(),
getTimePoints(),
plot.TP(),
summary.TP()
Examples
## Create a TP object containing the data from the Phenovator.
phenoTP <- createTimePoints(dat = PhenovatorDat1,
experimentName = "Phenovator",
genotype = "Genotype",
timePoint = "timepoints",
repId = "Replicate",
plotId = "pos",
rowNum = "y", colNum = "x",
addCheck = TRUE,
checkGenotypes = c("check1", "check2",
"check3","check4"))
#> Warning: The following plotIds have observations for less than 50% of the time points:
#> c24r41, c7r18, c7r49
## Remove the first and last time point from the TP object.
phenoTPNew <- removeTimePoints(phenoTP,
timePoints = c(1, 73))
## Compare by looking at summaries.
summary(phenoTP)
#> phenoTP contains data for experiment Phenovator.
#>
#> It contains 73 time points.
#> First time point: 2018-05-31 16:37:00
#> Last time point: 2018-06-18 16:37:00
#>
#> The following genotypes are defined as check genotypes: check1, check2, check3, check4.
summary(phenoTPNew)
#> phenoTPNew contains data for experiment Phenovator.
#>
#> It contains 71 time points.
#> First time point: 2018-06-01 09:07:00
#> Last time point: 2018-06-18 14:37:00
#>
#> No check genotypes are defined.