removeSerieOutfunction now has an extra argument reason allowing for restricting removal of outliers to one or more reason the outliers where tagged.
serieOutobjects now has an extra argument reason allowing for restricting the plotting of outliers to one or more reason the outliers where tagged.
detectSerieOutfunction is now able to handle plotIds with irregular naming, i.e. plotIds starting with a number.
estimateSplineParameterscan now be plotted in a box plot and histogram.
estimateSplineParametersfunction multiple parameters can now be estimated at once.
detectSerieOutthat caused slope outliers to be never detected is fixed.
fitSplinefor missing values at the beginning or end of a time course is fixed.
detectSerieOutfunction now checks for number of plotIds per plant in the correct location leading to a more user friendly error message.
detectSerieOutfunction now uses an extra criterion for checking if time courses our outlying. See the function documentation and vignettes for a full explanation of this new criterion.
removeSerieOutfunction is renamed to
traitsand now accepts a vector of traits that for which outlier values can be replaced by
detectSerieOutnow has an extra parameter
geno.decompto restrict the output to selected levels of the geno.decomp variable in the data.
estimateSplineParametersnow allows the specification of the time unit used on the x-axis.
centered = TRUEby default.