statgenHTP 1.0.5 2021-09-15

  • No user visible changes

statgenHTP 1.0.4 2021-08-20

  • The removeSerieOut function now has an extra argument reason allowing for restricting removal of outliers to one or more reason the outliers where tagged.
  • The plot function for serieOut objects now has an extra argument reason allowing for restricting the plotting of outliers to one or more reason the outliers where tagged.
  • The detectSerieOut function is now able to handle plotIds with irregular naming, i.e. plotIds starting with a number.
  • The results of estimateSplineParameters can now be plotted in a box plot and histogram.
  • In the estimateSplineParameters function multiple parameters can now be estimated at once.
  • A bug in detectSerieOut that caused slope outliers to be never detected is fixed.
  • A bug causing predictions to be made in fitSpline for missing values at the beginning or end of a time course is fixed.
  • The detectSerieOut function now checks for number of plotIds per plant in the correct location leading to a more user friendly error message.

statgenHTP 1.0.3 2021-06-18

  • No user visible changes

statgenHTP 1.0.2 2021-06-10

  • Plotting second derivatives of fitted splines, plotted first derivatives. This is fixed now.
  • The detectSerieOut function now uses an extra criterion for checking if time courses our outlying. See the function documentation and vignettes for a full explanation of this new criterion.
  • The parameter trait in the removeSerieOut function is renamed to traits and now accepts a vector of traits that for which outlier values can be replaced by NA.
  • Plotting the output of detectSerieOut now has an extra parameter geno.decomp to restrict the output to selected levels of the geno.decomp variable in the data.
  • Computing the area under the curve in estimateSplineParameters now allows the specification of the time unit used on the x-axis.
  • Fitting models using SpATS is now done using the option centered = TRUE by default.

statgenHTP 1.0.1 2021-03-09

  • No user visible changes

statgenHTP 1.0.0 2021-03-05

  • Initial CRAN Release